Basic Information
VIS ID
TVIS42000858
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
101721
Orient
+
Integrated sequence
CTATAGACGGTTGGGCAGTAGGCTCGGAGTGTCTGGGAGAGGTTCTGTGCGGCCACGGTTGTGGCTCCCGTGACCAGGCAGTCCATCGTGTGGTGGAGGC| |AGCTAACGCTGGTGCTCTTGCCAGCCCCCGCCGTTCCCGTAATTACATAGGCTGAAAAGGGCAGGAAGGGGGGCTCCGAGAGCTCCGGGTCAAACTCGGG
Host Sequence
Chromosome
chr8
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
72565243/71653008 (Hg38)
End
72565243/71653008 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/7273751; hsa-mir-10400/Downstream/2895535;
Nearest TSS
ENST00000518652/Upstream/60983; ENST00000521131/Downstream/22292;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/95682, chr8-CpG: 74/Downstream/188631
Upstream sequence
cctatctcaaagttgacttgtccaaaacagaacttttgattatcaatttcaccccacacgtgtttacatgcacacacacacacacccacacaaacacaca
Downstream sequence
tcctgaaattcaaagtgctaggtcaaagaggatgtgcatttgtaatccatagctgttcttggtagatatactgattcatcttttagtaacaacatatgag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate