Basic Information
VIS ID
TVIS42000859
Fusion event
EBV-CRISPLD1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
117200
Orient
+
Integrated sequence
GCTCAGGAGCGGCTGCTGAACGTGGTAAGTTATGTGTGTCAGGAGCATCGGCAAGATTTTGACATGCAGGACAGCATGGTCTCATGCCCCTGCTTTCGCC| |TGCACATCCCGTCCTACATCACCATGGACAGCAACATCCGAGCAACCACCAACCTCTTTCTGGACGGGGCCTTTAGCACCGAGCTGATGGGTGACACCTC
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
75929034/75016799 (Hg38)
End
75929034/75016799 (Hg38)
Orient
-
Location type
Intronic
Target gene
CRISPLD1
Nearest miRNA
hsa-mir-124-1/Upstream/311052; hsa-mir-10400/Downstream/1949969;
Nearest TSS
ENST00000518652/Upstream/16625; ENST00000494318/Downstream/12661;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/31918, chr8-CpG: 91/Downstream/390416
Upstream sequence
gggaggcctcagggagcttttattcaagggggaaaggaaagggggagaaggcacatcacatggcaaaagcaggagcaagagagagagagagtggaggagg
Downstream sequence
AATTTTGTCATTAGGCTATATATAATGAACTACAACTGCTTTTATATTATTTAAGTTATTTAGGTATTTTTTTCTTTGTAGCCCAAATTGTTTCTTGTGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate