Basic Information
VIS ID
TVIS42000860
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
84192
Orient
+
Integrated sequence
TCCTGTCGCCATTCCTTATGATGATCCGTTAACAAACGAGGAGATTGATCTGGCCTATGCCCGCGGGCAGGCCATGAATATTGAGGCTCCTAGACTGCCA| |GATGATCCTATAATTGTTGAGGATGACGACGAAAGTGAGGAAATTGAAGCTGAAAGCGACGAGGAGGAAGACAAGAGTGGAATGGAATCTCTTAAAAATA
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
78690872/77778637 (Hg38)
End
78690872/77778637 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/811787; hsa-mir-10400/Downstream/1553551;
Nearest TSS
ENST00000518652/Upstream/327940; ENST00000521879/Downstream/369464;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/777816, chr8-CpG: 46/Downstream/737561
Upstream sequence
GATTCAATGAATCTTTTTATATTAAAAAAAAAAGAAATACATAAAAGACCAGTTGGCCACAAGACAGTTGGCCACAAGAGGGTAGAGAATAGACATAAGG
Downstream sequence
gtgtgttttgtgtagtgtgtgtgtgcgtgtgtgtgATATGCATGTATTTTACAGAGTATATCCATGATAatagagaggttaatcaaattgccaaagttta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate