Basic Information
VIS ID
TVIS42000861
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
155725
Orient
+
Integrated sequence
TTGCAGCCACGTGGCCACGTGACACACACTGTTGGGATGGGAGAGGGTGATCTTGTGGTAGTCGCCGGCATGGTTGCCGTAGCCCATAATGGAACGGCGC| |GTGACCTTCTCCACCGAGACCCGGCAGGGGGTCCTGCGGTCGAAGGTGCTGGCCTTGAGGGCGCTGAGGACTGCAAACTCCACGTCCAGACCCTGAGGCG
Host Sequence
Chromosome
chr8
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
107201655/106189427 (Hg38)
End
107201655/106189427 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA8A
Nearest miRNA
hsa-mir-12123/Upstream/1704962; hsa-mir-10400/Downstream/6454066;
Nearest TSS
ENST00000518652/Upstream/362857; ENST00000577661/Downstream/79314;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/869535, chr8-CpG: 19/Downstream/26130
Upstream sequence
atggatgggtagatggatggatggaaggatgaaggatgaacagatgaaagagagatggagatggaggatggaggatggatgaacagggatggatgggtgg
Downstream sequence
ACTCCTGTTTAAATCTTACAGTATTGATTTTGTAAGCTAAAATTTCAATTTCCTTTCCTCTTTGACAGTCACAAGGACTTCCCTGGTCTTTAGAGACAAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate