VISDB Viral Integration Site DataBase

VIS ID

TVIS42000862

Fusion event

EBV-EMC2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

152068

Orient

-

Integrated sequence

ATATCAGGCGCGGCTTCCTTCCGAATTTTGTGCGCAAAAGTTTCCAGATGATGATAACTGTGAGGAGGACGATCAGGACTGCCGCCAGTAGGTAGCAGCC| |GGCTTTCAGTCCTTGGACGGCCGTGTGCATGCCTTTGGTGGGGCCTTCCCTGCACATGTTGGGGCCTCTGTTGAGATTGGCGTCGGGGCCCATGGTAATG

Chromosome

chr8

Cytoband

q23.1

Reference genome

Start

End

109461922/108449693 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-6514-3p ; hsa-mir-6771-5p ; hsa-mir-425-3p ; hsa-mir-7977 ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6746-5p ; hsa-mir-338-3p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6847-3p ; hsa-mir-194-3p ; hsa-mir-5693

Nearest miRNA

hsa-mir-12123/Upstream/3965228; hsa-mir-10400/Downstream/4193800;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/5659, chr8-CpG: 36/Downstream/337507

Upstream sequence

aatatcttggcattcttgtggaaagttaattgaatgtaacaatttatttctggactctcaatttcattcctctgtatctttattcctataccaatatcac

Downstream sequence

TACATGATTGTGAGTTTATTTTCCTTACCTAAAAAGCTGATTTTGTCTTGTCAGGTTTTTGACATCTATCGGATGTGTATGTGTGTGTCTGGGTACATAT