Basic Information
VIS ID
TVIS42000863
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
80083
Orient
-
Integrated sequence
CCTGGATGACAACATGGAAGAAGAAGTCCCATCTACCTCGGTTGTGCAGGAACAGGTATCGGCGGGAGATTGGGAAAATGTCCTCATAGAGTTATCAGAT| |AGCAGCTCAGAAAAGGAAGCAGAAGATGCCCACCTGGAGCCGGCCCAGAAGGGTACGAAGAGAAAGCGGGTCGATCATGATGCCGGTGGGTCAGCTCCAG
Host Sequence
Chromosome
chr8
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
116109089/115096860 (Hg38)
End
116109089/115096860 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/2453277; hsa-mir-10400/Downstream/1777868;
Nearest TSS
ENST00000518652/Upstream/814724; ENST00000415088/Downstream/395361;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1664004, chr8-CpG: 33/Downstream/551345
Upstream sequence
atctaagattgattctgagcctcaaatgtactgggtagaaagaaaaaacttgcggatctcagtacctcagtttttataatactaataaaatccaaacagt
Downstream sequence
GACTCTTGCCTCTCCAGAAGGAAGCAAAGGGATAGTGTACCATCCATGGAACACAAACCCATGGTGTATCCAGAAGTACTCTGTCCTCGAAGAATTTCTC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate