Basic Information
VIS ID
TVIS42000864
Fusion event
EBV-SAMD12-AS1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
3674
Orient
-
Integrated sequence
TGCCTCACAAGCATCCTGTCACACCCCACCGTGGGAAGCAAGGAGCACTTGGTCAGGCACACGGACAGGGTCAGCGGAGGACGCGTGGCACAGCAGCCCG| |GGGTAGGTCCCCTGGACCTGCCGCTGGCGGACTACGCCTTCGTTGCCCACAGTCAGGTCTGGACCAGGCCCGGTGGGGCTCCTCCCTTGCCCTATCGTAC
Host Sequence
Chromosome
chr8
Cytoband
q24.12
Reference genome
GRCh37/hg19
Start
119700457/118688218 (Hg38)
End
119700457/118688218 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
SAMD12-AS1
Nearest miRNA
hsa-mir-12123/Upstream/1813418; hsa-mir-10400/Downstream/636953;
Nearest TSS
ENST00000518652/Upstream/66223; ENST00000521788/Downstream/240855;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/66144, chr8-CpG: 24/Downstream/263489
Upstream sequence
aatacaaaaattcgccaggcatggtggtgggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaaacgggaggcagaggttgca
Downstream sequence
TAACATTCTTGCCTGCCCAACTTCAACCACGTCCACTTCACCCTTGAAACGATATTACGCATCCTTGTCCTTCCAAATGTTAGGCATTCAAGCCTCTCCT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate