Basic Information
VIS ID
TVIS42000865
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
51274
Orient
-
Integrated sequence
TCTCGGAAGCCCTCGTTTCGGCCCCGAAATAGGGCCTTGCCATCAATCGGGGGCCTGGGAGAGTGATGGGGGCGGCCAATCCCGGGGTAACTGTCACGTC| |CCGGGGGGAGGAGGTAGGAGACAGCCAGTCCCTGGGCCTGCCAGGGGCCACCTTCTCTAAGAGGGGGCTCTGTGGGCTGGGAGGGCCAGAGGCCTCAGAT
Host Sequence
Chromosome
chr8
Cytoband
q24.12
Reference genome
GRCh37/hg19
Start
120140906/119128667 (Hg38)
End
120140906/119128667 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA8C ; FRA8E
Nearest miRNA
hsa-mir-12123/Upstream/2253867; hsa-mir-10400/Downstream/196504;
Nearest TSS
ENST00000518652/Upstream/59885; ENST00000534619/Downstream/36367;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/176269, chr8-CpG: 86/Downstream/79482
Upstream sequence
ggcatattggcatatacctgtaatcctagctacttgggaggctgtgaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagccaagatca
Downstream sequence
GATTGTATGCTTGTGGAGTCAAATTTATTATTATCCATATTTTTATGAATAAAAAATTGGAGTTTGATAAGTTACCTTAGATGCTCTACATCCTCCATTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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