Basic Information
VIS ID
TVIS42000866
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
41959
Orient
+
Integrated sequence
CGTACTGGGGCCTGTGGACACCTGAGGGAGCGGCCGTTGGTGGGTATGTGTTGGAATTGCTCCCACCCTCAATTTTCGCTTGCCTTCTTCCCTTGTTAAC| |CTGATAGCATAGCCTCTAGGTTTCCTTGTAGGTCTGTTTGGGTTTGTTGGTTCACGTGGTGCTAACTTGAATTTTTTGGTTTTCTAGTTCCCTCTTAATT
Host Sequence
Chromosome
chr8
Cytoband
q24.12
Reference genome
GRCh37/hg19
Start
121936488/120924248 (Hg38)
End
121936488/120924248 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA8C ; FRA8E
Nearest miRNA
hsa-mir-12123/Upstream/1598983; hsa-mir-10400/Downstream/2291540;
Nearest TSS
ENST00000518652/Upstream/11183; ENST00000522197/Downstream/715045;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/111768, chr8-CpG: 64/Downstream/715177
Upstream sequence
tcaccacgcctgactaatttttgtatttttagtagagacggggtttcaccatgttagtcaggctggtctcaaactcctgacctcatgatccgcctgcctc
Downstream sequence
TTGTTTTAATATGGTATTTCCCCATCAAAAATTCAGTTTAAAGCAGATAGAAAATATTTGATGCTCATCTTAATGCTACCCAGAACTGAGAAACGCCTCT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate