Basic Information
VIS ID
TVIS42000867
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
86053
Orient
+
Integrated sequence
GAGTGATTTCGCCCATGTAACAAGAACTGGGATGAACCCTGGGGCAACAGACTGCGGGGAGGAGGGGGGCAGTGATAAGTCATGACAATTTTAGATGAGG| |TAGAAATTTTGCATATTTTCAGACCCACCATGGAATCATTTGAAGGACAGGGGGACTCTAGACAGTCACCCGACAATGAGCGGGGAGATAATGTACAGAC
Host Sequence
Chromosome
chr8
Cytoband
q24.12
Reference genome
GRCh37/hg19
Start
122166194/121153954 (Hg38)
End
122166194/121153954 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA8C ; FRA8E
Nearest miRNA
hsa-mir-12123/Upstream/1828689; hsa-mir-10400/Downstream/2061834;
Nearest TSS
ENST00000518652/Upstream/240889; ENST00000522197/Downstream/485339;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/341474, chr8-CpG: 64/Downstream/485471
Nearby gene
LOC105375731(+4719) ;
Upstream sequence
cattcctgtcttctacccaccagatgccagtggcacatcctttcccccacaattgagggggagttgtgacaatcaaacttgttcccagacattgccaaat
Downstream sequence
ATAGTTCATTTGCATTTTTGTTTTTCTTTTATTTTAATTGGAGTTTGTTTACTGACACTGGGCATCTAACATTAATCCCATTCAGCCTGGACACCTATAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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