VISDB Viral Integration Site DataBase

VIS ID

TVIS42000868

Fusion event

EBV-DMRT2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

105474

Orient

-

Integrated sequence

CGTCGCGTGTCTGAGGTGCCATAGCGGTGAAGGGCCCGCAGCCAGGTTTGCGCGTCCCGCGCCTGCCCTCCGCCATCAGGCGTTCCCACGGGGGCGCCCC| |TGGCAGAGAGGTGGCAGCGGGCCAATTCGTAGAGCCACCAAGTGGCATCAGCCTCAAGGATGGCTGTGGCCTCCGCGCGCCCGACCACCGTCGTCTCGTC

Chromosome

chr9

Cytoband

p24.3

Reference genome

Start

End

1045605/1045605 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-580-3p ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-646 ; hsa-mir-6501-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-2278 ; hsa-mir-218-1-3p ; hsa-mir-3620-5p ; hsa-mir-1587 ; hsa-mir-1273e ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-203a-5p ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-4675 ; hsa-mir-4741 ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-6829-5p ; hsa-mir-5787 ; hsa-mir-4656 ; hsa-mir-4505 ; hsa-mir-4731-5p ; hsa-mir-378g ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-4317 ; hsa-mir-5006-5p ; hsa-mir-7159-5p ; hsa-mir-505-3p ; hsa-mir-1289 ; hsa-mir-4755-3p ; hsa-mir-7113-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-3065-5p

Nearest miRNA

hsa-mir-1302-9/Upstream/1015324; hsa-let-7a-1/Downstream/3804692;

Nearest TSS

Nearest CpG islands

chr9-CpG: 66/Target, None/Upstream, None/Downstream

Upstream sequence

ctgtttttccagctcgttccttgctatgatcgcctaaatggggtattagaagaagactgcaatgttggaggatgaagaagaaacttgctacttcctgttt

Downstream sequence

CCATCATGTAAATATATCTCAAGTGTCTATGCCTACTAAAGTATCTGGGCCCAGTGCCACATACCATTCCATTTACTAACTTTGTTTTTGTAATCTTAGC