Basic Information
VIS ID
TVIS42000871
Fusion event
EBV-chr9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
66804
Orient
+
Integrated sequence
CTCACCAAGGACTGCGGGTGTCTCAAGCTACTCAATGAGAGGGACTTGGAGTTTTACAAGTTCCTCTTTACGTTCCTGGCCATGGCCGAGAAGCTTGTGA| |ACTTTAACATTGATGAACTGGTCACCAGCTTCGAGAGCCACGACATTGATCACTACTACACCGAGCAGAAGGCCATGGAGAACGTCCACGGGGAGACTTA
Host Sequence
Chromosome
chr9
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
21072849/21072850 (Hg38)
End
21072849/21072850 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA9C
Nearest miRNA
hsa-mir-101-2/Upstream/356662; hsa-let-7a-1/Downstream/439265;
Nearest TSS
ENST00000422679/Upstream/41214; ENST00000380205/Downstream/5113;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/41026, chr9-CpG: 35/Downstream/262276
Nearby gene
IFNB1(+4255) ;
Upstream sequence
AAGATCTTCTAACCCCCTTCTAGAAGAAGCCTGTAGAAGCCATCTCTTTCTCCATAACCCTGGACAGCAAGTGACCTCAGGCCCTCATTGTATTTTATAA
Downstream sequence
tctcattgatctgtctaatgttgacagtggagtgttaaagtcttccattattattgtgtgggagtctaagtctctttgtaggtctctaaggacttgcttt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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