Basic Information
VIS ID
TVIS42000872
Fusion event
EBV-chr9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
93259
Orient
+
Integrated sequence
GCTAAGCTACTACTCCCCCAAGGATGAACAGCGTGACATCGCCGAGGTTCTTGACCACCTCAAGACGAATCGGGACCTGGGGCTGGACGACAGACTCTGG| |GCCCTGATTAGGAAACTGCGCCAAGACAGACACCATGCCTCTGTAAATGTCCTCATGCCAGGAAGCGACTACACAGCCGTGTCGCTGCAGTACTACGACG
Host Sequence
Chromosome
chr9
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
23181978/23181979 (Hg38)
End
23181978/23181979 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA9C
Nearest miRNA
hsa-mir-101-2/Upstream/1669794; hsa-let-7a-1/Downstream/5681647;
Nearest TSS
ENST00000422679/Upstream/414804; ENST00000423440/Downstream/256721;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/734283, chr9-CpG: 156/Downstream/638714
Upstream sequence
ACTGCTATCAATGGTAGGAAAAGATGATGATGTTGCAGAGGTGCTGCTCCCTAAAGTGGAGGTGTCTGGAGGCATCATAATGGGATGGCTCAGAATAACA
Downstream sequence
gGATTTGAAAATAAGTAAGATAACACCTTAATAGAAGAGAGGTAGCCTGGGTAAGATAGTGCTAAAACCTAGAAAattcccttttggcgacaagtaattg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate