Basic Information
VIS ID
TVIS42000876
Fusion event
EBV-chr9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
100961
Orient
+
Integrated sequence
CTGCCCGGCAGTCTTGAGCGTGGCATGGAGGGTGGTGAGGAAGGTCTTGACCTCGGCGTGGGAGAGGAAGAGCCGGGTCCAGCCCACGTACTGCGCGGGG| |TCCATTATGGCCGCCCTGGGGACGACGAAGCGGTCGACGTAGGCCAGGATGTCCGGCGAGAGCTCGAGGCCGTACTCGAGGGTCTTCATGAGGTGTCCAA
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
77895511/75280595 (Hg38)
End
77895511/75280595 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/4470511; hsa-let-7a-1/Downstream/8689153;
Nearest TSS
ENST00000422679/Upstream/192052; ENST00000455583/Downstream/299074;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/191692, chr9-CpG: 148/Downstream/609719
Upstream sequence
TAGATTTATATAATTTATATACCACTTATTCATTTCAGAAAGCTCCTCAATTATAATTAAGAAATTGTCACAATCCCTCATGGGGAAAGATGTACTTTCC
Downstream sequence
catttgttagttttgtgacattccccctcagtctctcaatttttaagagcttcagtcattggacATtgtcttcagtcagtggacattttgtgttgctata
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate