Basic Information
VIS ID
TVIS42000877
Fusion event
EBV-chr9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
84334
Orient
+
Integrated sequence
ATTGAAGCTGAAAGCGACGAGGAGGAAGACAAGAGTGGAATGGAATCTCTTAAAAATATACCGCAAACACTGCCGTACAATCCAACAGTATACGGCAGGC| |CCGCGGTGTTTGACCGAAAGTCAGATGCAAAATCAACCAAAAAATGCAGGGCCATAGTAACTGACTTTAGTGTAATCAAGGCCATTGAAGAGGAACACAG
Host Sequence
Chromosome
chr9
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
79642187/77027271 (Hg38)
End
79642187/77027271 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/6217187; hsa-let-7a-1/Downstream/6942477;
Nearest TSS
ENST00000422679/Upstream/7616; ENST00000471439/Downstream/150082;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/4018, chr9-CpG: 136/Downstream/149883
Nearby gene
FOXB2(-6318) ; LOC105376096(+7352) ;
Upstream sequence
AAAAAAAGGTAGTTTTAACTTTTCTGGGTGCTGGCGTAGTTAAAGAGATGGTCAGGTAATTAACTCTCCCCTCCTGGCAGGCAGCATATAATAATAGCAG
Downstream sequence
tctttctctctttatatttttttgtctcaaattttaaaaatatgatataagtatagctagtcatgttcttttttggtttccacttcatggaatatctttt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate