Basic Information
VIS ID
TVIS42000879
Fusion event
EBV-chr9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
113686
Orient
+
Integrated sequence
TAAGACCTGACGTTTCAGTACTTGGCAATTGTAGAGCATAGCCCGGCTGTAAAGGTCAGAAAATCGCAGCAGGGTCCAAGGTTGTGCTGTACATGGGACC| |TCTTTCCCATTAGCAAGAACCCCCTGCAGGACACGTGACATGTCCGGGTGCATTTTGGGTGGGTTAAATCTCAGTCCCACCACAAAGGGGGCATCCTCCG
Host Sequence
Chromosome
chr9
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
82659687/80044772 (Hg38)
End
82659687/80044772 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/9234688; hsa-let-7a-1/Downstream/3924976;
Nearest TSS
ENST00000422679/Upstream/14193; ENST00000413050/Downstream/826523;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/471127, chr9-CpG: 255/Downstream/1642452
Upstream sequence
tgcttgagcccaggagatcgagactacagtgagctatgatcacacactgttcttcagcctgggtgccagagtgagaccctgtctcaaaagaaaaaaaaaa
Downstream sequence
actattataattttaaaaaaccctttgagccacagtcaaatatgaagtaattaacaagcaaaaaaaaaaaatgtttacatctaacttttcaacagcaaca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate