Basic Information
VIS ID
TVIS42000882
Fusion event
EBV-chr9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
72839
Orient
+
Integrated sequence
TTTGATCTTGTGACGCATGCGGCGCAGGCAGGCCGTTAGGCCCATGAGCTTCTGCAGCACAGACACAAACCCTTGTACTGCGCTTGTTCCCACAATAGCA| |TGGCCTCTAGGTAGGGGGGTGATGACGCGAAAGCCCAGTTTTCCCGTGCATATGCAAAAGGGGAGCACATCTTCCATATTATCCGGGTCGGCGGGTGGAC
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
103430736/100668454 (Hg38)
End
103430736/100668454 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/2439237; hsa-mir-12126/Downstream/5932474;
Nearest TSS
ENST00000422679/Upstream/90375; ENST00000494890/Downstream/360255;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/69424, chr9-CpG: 96/Downstream/359876
Upstream sequence
gctcctcctGTGGACCACCCCACTGTGCCCTGGCCTCGCTGGGACGGGTTTCCAGTGGGCGCATCAGTTACAATGACATGTTTGAGATGCTGAAACACAT
Downstream sequence
CTTGTCTGCAAAATAATGGAACCATAGGCGGCTGATTGACCTCAGTGGTTCATTTACTTACAGAATCACCCTTTTTCATATTATCCCTTTGTTACTTTAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate