Basic Information
VIS ID
TVIS42000883
Fusion event
EBV-chr9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
110968
Orient
+
Integrated sequence
AACTGGGGCATAAACAGGGCGTGGCAGGACGTGCAGGCCGACAGGTAGTCCACCAGGGCCTTGTCCTGCCCATCCTCGGCCGTGGCCTTCCCAATCTGAA| |TCATGTCACACACCATGAGCTCGTGATACAGCTCCGTCACAGAGTCATAGAGTTTGACCGTGGCATTATCTGCATGTGCATACACGGCCCCGTAGCTCCC
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
End
105852506/103090224 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/4861007; hsa-mir-12126/Downstream/3510704;
Upstream sequence
GAAGAAAAATTTGCCATTCTAGCAAATAGCACAGAAAAACACACATGCCTATTTCTAGTTTTCTCCATCCTTTcacacacacacacacagacacacacag
Downstream sequence
tttttctccccccatggggccttttgtctgtttcttgttcctgtgtgtatcaccctagcaatcaatacttttttatgccagcaatataaattcctttcca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate