Basic Information
VIS ID
TVIS42000884
Fusion event
EBV-chr9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
67948
Orient
+
Integrated sequence
CCCCGGCCGCCGTGTCATTTAGAAACCTTGCCTACGGGCGCACCTGTGTCCTGGGCAAGGAGCTGTTTGGCTCGGCTGTGGAGCAGGCTTCCCTGCAATT| |TTACAAGCGGCCACAAGGGGGTTCCCGGCCTGAATTTGTTAAGCTCACTATGGAATATGATGATAAGGTGTCCAAGAGCCACCACACCTGCGCCCTGATG
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
106986855/104224574 (Hg38)
End
106986855/104224574 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/5995357; hsa-mir-12126/Downstream/2376354;
Nearest TSS
ENST00000422679/Upstream/97167; ENST00000334726/Downstream/279689;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/130062, chr9-CpG: 78/Downstream/523051
Upstream sequence
agtgtttgggattcatcttgtatgcagcaaagatactgaatggttttaagcaggaacatgttttcaagtagcttgggctatagtggagagtagatgagag
Downstream sequence
gatcaccaggtcaggagatcaaggccatcctgaccaatatggtgaaaccctgtcactactaaaatacaaaaaaattagccaggcatggtggcacacacct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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