Basic Information
VIS ID
TVIS42000885
Fusion event
EBV-chr9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
153762
Orient
+
Integrated sequence
AGCCCACAGGTAGCCCTTGTGTAAATGACTCTTGGAAGGGCCGGTGGGAGAGGAGGCTGGCCGCCTCCTTTACCCGGGCATCCGCCAGCACCAGGTCGAG| |CACGCGCCGGCAGCGTGTCTGCACAAACTTGCAGGCCGTCTTCCGGACGAGCTCCACCCCCTTCATCAGGGTCTTGCCGTCCGTCAGCACCCCCACATAT
Host Sequence
Chromosome
chr9
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
110597270/107834989 (Hg38)
End
110597270/107834989 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/1233967; hsa-mir-12126/Downstream/1211240;
Nearest TSS
ENST00000422679/Upstream/344507; ENST00000333999/Downstream/419831;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/117850, chr9-CpG: 67/Downstream/1020051
Nearby gene
RPL36AP6(-133) ;
Upstream sequence
TGATTTTACAACTTTTTGCCATGAAGAATCTTTCCAGCAGATCCGTACACTGCCTCCTATCTTCTCTGCCCCACTTCTcctcccttccttcttccctctc
Downstream sequence
gggactgtatgtgtatgccgtgcccagctagattttacttttagtttttgtagatgtggagtttcactgtgttgtccagggtggcctcaaacacccaggc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate