VISDB Viral Integration Site DataBase

VIS ID

TVIS42000886

Fusion event

EBV-TNFSF15 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

3731

Orient

+

Integrated sequence

CACACGGACAGGGTCAGCGGAGGACGCGTGGCACAGCAGCCCGGGGTAGGTCCCCTGGACCTGCCGCTGGCGGACTACGCCTTCGTTGCCCACAGTCAGG| |TCTGGACCAGGCCCGGTGGGGCTCCTCCCTTGCCCTATCGTACCTGGGATCGAATGACAGAGAAGCTGCTTGTCTCCGCAAAACCCGGCGGAGAGAACGT

Chromosome

chr9

Cytoband

q32

Reference genome

Start

End

117559687/114797407 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-4291 ; hsa-mir-610 ; hsa-mir-545-5p ; hsa-mir-3619-5p ; hsa-mir-761 ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-8063 ; hsa-mir-3617-3p ; hsa-mir-34a-3p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-6875-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-103a-2-5p ; hsa-mir-4778-3p ; hsa-mir-4469 ; hsa-mir-150-5p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-186-3p ; hsa-mir-6732-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-623 ; hsa-mir-4693-5p ; hsa-mir-550b-3p ; hsa-mir-5003-3p ; hsa-mir-6832-3p ; hsa-mir-1183 ; hsa-mir-6079 ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-7160-5p ; hsa-mir-4649-3p ; hsa-mir-5693 ; hsa-mir-383-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-3197 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4683 ; hsa-mir-4767 ; hsa-mir-4768-3p ; hsa-mir-6087 ; hsa-mir-6765-5p ; hsa-mir-6888-5p

Nearest miRNA

hsa-let-7a-1/Upstream/587878; hsa-mir-12126/Downstream/5447572;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/185611, chr9-CpG: 77/Downstream/1356676

Upstream sequence

ctcccgaatagctgggaatacaggcacatgccaccatgcccggctaattctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Downstream sequence

GGCTATTATATTACACTCTGAATTGTAGTTTTAACCTGTAGTCCCACAAAACTCCCCTCCGAATCTACTTTCCATACTCTCCCCACACTCATTCTTCTGA