VISDB Viral Integration Site DataBase

VIS ID

TVIS42000887

Fusion event

EBV-URM1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

78742

Orient

-

Integrated sequence

GTTCGTGTGATAATGAGTGTCTTGGGGGCCGTGCCAAGACCCGAGACAGTAATGTCAAATGTCCGATTGCTCGCAAATGCACCAGAAATATTTTCACAAC| |CCGAAGGTGTCCCCGAGGTGAGAGTCCATTTGCACTTAAAGTCAGTTTCAGTGTTGTTTGGCCAGGCCCAAAAGGCAGTCACTGTAACATTTGGCGAGTT

Chromosome

chr9

Cytoband

q34.11

Reference genome

Start

End

131142405/128380126 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-24-3p ; hsa-mir-3180-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-4747-5p ; hsa-mir-5196-5p ; hsa-mir-765 ; hsa-mir-3202 ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-617 ; hsa-mir-3179 ; hsa-mir-7515 ; hsa-mir-330-3p ; hsa-mir-6743-5p ; hsa-mir-9500 ; hsa-mir-4688 ; hsa-mir-4779 ; hsa-mir-3154 ; hsa-mir-6835-3p ; hsa-mir-1304-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-mir-6765-5p ; hsa-mir-4718 ; hsa-mir-6884-5p ; hsa-mir-3188 ; hsa-mir-485-5p ; hsa-mir-2467-5p ; hsa-mir-3975 ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-4251 ; hsa-mir-6787-3p ; hsa-mir-1207-3p ; hsa-mir-1324 ; hsa-mir-5584-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4524b-3p ; hsa-mir-7109-3p ; hsa-mir-4304 ; hsa-mir-383-3p ; hsa-mir-3065-3p ; hsa-mir-3617-3p ; hsa-mir-34a-3p ; hsa-mir-629-3p ; hsa-mir-3977 ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-6826-3p ; hsa-mir-4521 ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-550a-3p ; hsa-mir-550b-3p ; hsa-mir-4469 ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-3675-3p ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-605-3p ; hsa-mir-3190-5p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-370-5p ; hsa-mir-3714

Nearest miRNA

hsa-let-7a-1/Upstream/135096; hsa-mir-12126/Downstream/12492;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/8447, chr9-CpG: 152/Downstream/11941

Upstream sequence

AGCTTCTCTTCTTTGATCTCTATATTTTCTCTctctccctccttccctccctcctttccttcctcttgttcctttctccctttcctcctcttcctccacc

Downstream sequence

GGGGTATTAGGGACACAGGCTTTTCCTGCTTCCTGCTGGGGACCCCGAATGTGAGTGGAGCAGTGGCTCCCAGATTTATAGTGTGGTTAGAAGTTGCCAT