VISDB Viral Integration Site DataBase

VIS ID

TVIS42000890

Fusion event

EBV-CACNA1B integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

115578

Orient

+

Integrated sequence

GGACTCCCAGCGTGGCCCAACCTCTGCTCCCCTCTATTCTCCTCTTGCGTTATCTCCAATAGAATTTGCTTGAGGTCATACGTTTTAGGGTGCTCGACCT| |GGGCCGCGGCCACCGGCATATGCTCTATACCCGCCCCTCCGGGGGGCCCAGGATCTATAGGTATGGGCTGCATAGCCGCAGCAGACTCCTGGACCCCAGA

Chromosome

chr9

Cytoband

q34.3

Reference genome

Start

End

140997207/138102755 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-25-5p ; hsa-mir-8072 ; hsa-mir-3960 ; hsa-mir-5739 ; hsa-mir-3186-3p ; hsa-mir-377-3p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-8485 ; hsa-mir-6844 ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-1304-5p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1224-5p ; hsa-mir-3915 ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-1914-5p ; hsa-mir-15b-3p

Nearest miRNA

hsa-let-7a-1/Upstream/264239;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/55681, chr9-CpG: 49/Downstream/44943

Upstream sequence

aaacagactaatacaaagaccctgtcgaaaaaaaaaaaggagaaaggaagaagaaggaaggagaaggagggggaaggagaaggaggagaaggaggaggag

Downstream sequence

ctcttttttttaaataaattaccagtctccttatttctttatagcaatttcagaacagactaatacaTCATGACAGTATTATTACTATACTACATAGTTG