Basic Information
VIS ID
TVIS42000891
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
77910
Orient
+
Integrated sequence
CGTTGAATTGTCACTGGTGGAGGGGCTGAGTGTCTCTGGGTTTGAACTGGGTCTCAGTGACATGGAAGAGGTTGAACTTGAAGTTATGTTATGTTGGCCT| |GTGGTAACAGCACTGGTTGCATTTTTTGGTTGGCTGGTAACTACTGGGGTGGGACTTGTTCCTCCTAAGGTGTGGTTGGTGGCATTTGCCTGTGGACTTG
Host Sequence
Chromosome
chrX
Cytoband
p22.32
Reference genome
GRCh37/hg19
Start
5805104/5887063 (Hg38)
End
5805104/5887063 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-1/Upstream/3277809; hsa-let-7f-2/Downstream/496843;
Nearest TSS
ENST00000429181/Upstream/160758; ENST00000217961/Downstream/16290;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1966041, chrX-CpG: 21/Downstream/5903
Nearby gene
NLGN4X(+2963) ;
Upstream sequence
gggaatcaccaccttgtctcccacaatggctgatcgaatgtacaatcccaccaacattatataagcattcctttttctccacaaccttgccagagtcagt
Downstream sequence
cttattATCACTATCGCCATCACCCTTGAAAAGAGGACAGTCATTAATTTCTCAAACAGATTGCTCTGCCTCCTTAATGCTTTCCTTGCATCCAGAGCCC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate