Basic Information
VIS ID
TVIS42000892
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
9573
Orient
-
Integrated sequence
GGCAAGTTGTACCAACCAACTGAAGGGATTACATGCACTGCCCCGCGGGAAATACGTCCTACCCAGGAACCCGAAACAGTGTTTCCCAGAAGCTGTAAAA| |ATAGAACGCCCTGGAACTGCCCCACTGTGCAATGCAGCTTTTAGCCATGCCATGCTCTATAAATCACTTCCCTATCTCAGGTAGGCCTGCACACCTTAGG
Host Sequence
Chromosome
chrX
Cytoband
p22.31
Reference genome
GRCh37/hg19
Start
8876172/8908131 (Hg38)
End
8876172/8908131 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-1/Upstream/781070; hsa-let-7f-2/Downstream/2410483;
Nearest TSS
ENST00000429181/Upstream/40530; ENST00000432442/Downstream/124944;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/106613, chrX-CpG: 22/Downstream/434547
Upstream sequence
CGGAATCAGCAGCAGGTAGGGCAGACCCCAACCCCACTGATATCTCTGCTGCTTGCTTGCCAACCCTGTGAGCTGCCCACTGAGGCAATAGGCCTGGCAG
Downstream sequence
CTGGAGAAGTGGAGCATTTCAAAGTCAAAATCGCAAAAATGAGGACTCCGATGTGCCCTTTGCACATTCATGCTACATAAGGTACACCCATCTTTATTGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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