VISDB Viral Integration Site DataBase

VIS ID

TVIS42000894

Fusion event

EBV-NHS integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

91562

Orient

+

Integrated sequence

GGTTCATGGACAGGTCCTGTGGGGGTGGGAGCCAAAGAGGCAGGCAGGGGCCGGTTGGCCCACGGGGATCCGGGTGGATGGAAGGGCCTGATCCTCTTTG| |GCTGACACACCTCTCGCCCCTCGAACACGTCAGATATGGCACTGCCCGCTTCCGGCTTTGGCAGGAACATACCTTCCCGGCTATCCCTGAGGCCCTTCTT

Chromosome

chrX

Cytoband

p22.13

Reference genome

Start

End

17515980/17497857 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-548n ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-590-3p ; hsa-mir-4775 ; hsa-mir-4477a ; hsa-mir-9-3p ; hsa-mir-153-5p ; hsa-mir-4760-3p ; hsa-mir-4503 ; hsa-mir-6792-5p ; hsa-mir-4284 ; hsa-mir-3159 ; hsa-mir-6510-5p ; hsa-mir-4690-5p ; hsa-mir-6165 ; hsa-mir-5197-5p ; hsa-mir-24-3p ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-889-5p ; hsa-mir-8076 ; hsa-mir-32-3p ; hsa-mir-651-3p ; hsa-mir-5692a ; hsa-mir-3909 ; hsa-mir-6852-3p ; hsa-mir-520f-5p ; hsa-mir-382-5p ; hsa-mir-495-5p ; hsa-mir-4470 ; hsa-mir-580-5p ; hsa-mir-607 ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-1257 ; hsa-mir-3671 ; hsa-mir-580-3p ; hsa-mir-3163 ; hsa-mir-8084 ; hsa-mir-4652-3p ; hsa-mir-578 ; hsa-mir-4743-3p ; hsa-mir-4666b ; hsa-mir-5011-3p ; hsa-mir-6797-3p ; hsa-mir-6076 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-338-5p ; hsa-mir-1277-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-7161-5p ; hsa-mir-548a-5p ; hsa-mir-548u ; hsa-mir-494-3p

Nearest miRNA

hsa-mir-3690-1/Upstream/71903; hsa-let-7f-2/Downstream/2519231;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/120163, chrX-CpG: 84/Downstream/157408

Upstream sequence

CCCCTCCTCTCCGGCTACTCCGACCGCGGCGGAGTCAACCCCCACGGGCCCGGGGCTCGGACCCCCGCCGCTCCGCCTCGCACAGCCGGGCCGGCCGGTG

Downstream sequence

acttccaatttcttgctcctgcaaacagtgctgccataaataattatgtcaaatgtccttatggcacatgggggaaaaggtctctagggcagtggatctc