Basic Information
VIS ID
TVIS42000895
Fusion event
EBV-LOC105373146 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
80719
Orient
+
Integrated sequence
TCGTACATCTCCAGGCGACACTTGGGTGCACAGGTGGCCGTAGGTGTCACGTGACCTTTTCCGCCGGCACCTTTAAGCTGCCGCGATGTACCCCCGGGGA| |TCGCCAGTGGTTGTATGTTCAGAGCTCCGTGGGTAACATTGTACAGAGCTGTAATCCCCGCTACAGTATTTTCTTTGACTATATGGCTATACACAGGAGC
Host Sequence
Chromosome
chrX
Cytoband
p22.12
Reference genome
GRCh37/hg19
Start
21376758/21358640 (Hg38)
End
21376758/21358640 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105373146
Nearest miRNA
hsa-mir-23c/Upstream/1341453; hsa-let-7f-2/Downstream/7136915;
Nearest TSS
ENST00000429181/Upstream/227144; ENST00000645679/Downstream/14161;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1089947, chrX-CpG: 163/Downstream/15077
Upstream sequence
gttccaggtggtatttgATGACTGCGCCTAATCAGTTCTGGTACATGCAGCTATAAAATGATGCAATGtttttattgttttttttttttttttttgcttt
Downstream sequence
ccattcacaattgctacaaagaaagtaaaatacctagaaatacaacttataagggacatgaaggacctcttcaaggagaactacaaaccactgctcaagg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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