Basic Information
VIS ID
TVIS42000897
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
148155
Orient
-
Integrated sequence
CGGCTGCCCCGTGACCCGTGGGCCTTACCTTCCTGGCCATCGGGGGACCCTGGTGCTAGGGTCCCTTGTGTTGCTTTCTGCCATAGGGGGGAAAGCATCG| |CCTTCAGAATTGGCTGCTCCGTTGGAACATTTGAGGCCTACTGTATCCGTGTCCTGACAACATTCCCCGCAAACATGACATGGGTTAATTTAAACATGTT
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
35522577/35504460 (Hg38)
End
35522577/35504460 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-23c/Upstream/2862901; hsa-let-7f-2/Downstream/2519435;
Nearest TSS
ENST00000429181/Upstream/561664; ENST00000399988/Downstream/293882;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/560872, chrX-CpG: 37/Downstream/121293
Upstream sequence
GGACCAGAACAGGTGTGACTGGCAGGGAGCGAAGTCTGGAGCTTTGTCTGAGGCGCTGATAGGTGGATCGGCGGAAGGACGCGGAACCTGGACAGGTCGG
Downstream sequence
TTCATAGCAAACTCAAGAAAAGTGTCTCAATGATAAAGAAATGAATTTCAAAGTATAATGAAAATTATTTTCCATGTTCTTTCTCTAAATTACTGCAGTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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