Basic Information
VIS ID
TVIS42000898
Fusion event
EBV-CFAP47 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
45711
Orient
+
Integrated sequence
TGGCCGGTGAGGATGGATTTCAGAAACTCCAATTTGTAGTAGCCGAGGTTGGCATTTCTAATCATGTCAGAAGAGGACACAGGGAGGAAGCACCGGCAAA| |TGTAAAAGTGAAGCTGGATGTCAATGGCAAGAATCCTGGAGGGCATGAAGAGGGAATCCAACCCCCCGGCCATGGGGAAGTATTTTATCAGGATGTGTAA
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
36307134/36289019 (Hg38)
End
36307134/36289019 (Hg38)
Orient
-
Location type
Intronic
Target gene
CFAP47
Nearest miRNA
hsa-mir-23c/Upstream/3647460; hsa-let-7f-2/Downstream/1734876;
Nearest TSS
ENST00000429181/Upstream/223358; ENST00000630521/Downstream/72307;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/662819, chrX-CpG: 90/Downstream/668413
Upstream sequence
catggtgtactgtattcatctttaactgccctgaggaatgctattaaaggaatacagtacaatttatttatgcatgctcctattgatgggtatttaggtt
Downstream sequence
gatggggttttgctcttgttgctcaggctggagtgtaatggcatgatcttggctcaccacaacatccgcctcccgggttcaagcgattctcctgcctcgg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate