Basic Information
VIS ID
TVIS42000899
Fusion event
EBV-PAGE4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
47901
Orient
+
Integrated sequence
GTGGAGAGGCCCGGGGGCCTTGTCCGCTGGGCCAGGTCACAGACCAGCCCCTCATCCCTGACCCTCGCGCCCCATCTTGGCCCGTCCCTCTTGTCCCTTT| |CAGTGGTCACCGGTGGTGGGTGTGGAGCCGTGGCCTTTTGCAACGCCTTTTTCCTAGCTTATTTTTTGGTTGTGCGGTCTGTTTTCCCCGCGTTTTCCGA
Host Sequence
Chromosome
chrX
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
49593612/49829009 (Hg38)
End
49593612/49829009 (Hg38)
Orient
-
Location type
Intronic
Target gene
PAGE4
Nearest miRNA
hsa-mir-1587/Upstream/2241504; hsa-let-7f-2/Downstream/174139;
Nearest TSS
ENST00000429181/Upstream/133016; ENST00000478785/Downstream/251;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/229462, chrX-CpG: 57/Downstream/50294
Upstream sequence
aacttcagcaaagtctcaggatacaaaatcaatgtgcgaaaatcacaagcattcctatacaccaataatagacaaatagagagccaaatcgagtgaactc
Downstream sequence
AGGGCCACTGAGGTAGCAGCACTGAGAAAAAATTAAAGGGTAAATTTGCAGGTGAAATGCAGAGCTGGGAACATTCCTAGATCCAGAAGGACAGAACATT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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