Basic Information
VIS ID
TVIS42000900
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
46250
Orient
+
Integrated sequence
TACGCCACTCCTCGTGAGGGGGCAGCTGGACAGTCTTTTTCCGGTCAGGGGGTTTGGCTCGTTTGCGCTCGTGACTTTGTGAGCCATGACACATCTGGGT| |GGCAAGGTGAGGTCTTCTGGGTTTTTAATACCGGGGTCGGCACCAGTTTCTGGGACACCGCCACAAGGACAAGGTGGGCTAGCAAGTTCTCGAGTCTACG
Host Sequence
Chromosome
chrX
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
61872166/62652696 (Hg38)
End
61872166/62652696 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/7201114; hsa-mir-105-1/Downstream/1133306;
Nearest TSS
ENST00000429181/Upstream/4741876; ENST00000451979/Downstream/696950;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/4742209, chrX-CpG: 51/Downstream/698377
Upstream sequence
TCTCTTCAGTAAACAAAGAACAGACTGTTATTGGAGAACGTAAAAATTACAATAGAATATATTTCCCTATAGGAGCACAGTGGCCTTTAACTCAGCTGGA
Downstream sequence
acctgtcctttattgagcagttatgaaacactatttttgtggaatctacaagtggatatttgcagcgctttgctgcgtctagtggaaaaggacatatctt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate