Basic Information
VIS ID
TVIS42000902
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
157895
Orient
-
Integrated sequence
CCTCGTACTTCTCATGCATGGTCTTGTTCACCTGCTCTTCGATGCACTTGAAGGCGTCCGGGAGCTCTATGCCCACGGTTGTGTTGGTCACGAAGCTAGA| |GGTGCCCTCGTCAGTCACAAAATGTATTGACTTCCCTGTTTCTGTGGCGATGGTCGAGTCAAAGGTTTGCCAGTGTTGAAGCGGGCAGTAGGCTGTCCTG
Host Sequence
Chromosome
chrX
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
98353279/99098281 (Hg38)
End
98353279/99098281 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/4035055; hsa-mir-105-1/Downstream/7541533;
Nearest TSS
ENST00000429181/Upstream/524406; ENST00000485971/Downstream/1198019;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/2412914, chrX-CpG: 23/Downstream/841055
Upstream sequence
AAAAGTTTTTAGTTTTAGCCTCCATAAATTCAAAAATATATTTTGAGTTACTGTTTTCAATGTATTTTCTTCTTTCATCCtttttttttttttttttttt
Downstream sequence
cagagtgtacacggtgctcaaggaaagaaaatgttatttacaatggttgggggcctatcagcagaacttgtcattagtcagaaggcacgggtttatagtg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate