Basic Information
VIS ID
TVIS42000904
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
117188
Orient
+
Integrated sequence
AAGCTGAAGGATGCTCAGGAGCGGCTGCTGAACGTGGTAAGTTATGTGTGTCAGGAGCATCGGCAAGATTTTGACATGCAGGACAGCATGGTCTCATGCC| |CCTGCTTTCGCCTGCACATCCCGTCCTACATCACCATGGACAGCAACATCCGAGCAACCACCAACCTCTTTCTGGACGGGGCCTTTAGCACCGAGCTGAT
Host Sequence
Chromosome
chrX
Cytoband
q23
Reference genome
GRCh37/hg19
Start
112117089/112873861 (Hg38)
End
112117089/112873861 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/93073; hsa-mir-105-1/Downstream/1765574;
Nearest TSS
ENST00000429181/Upstream/33046; ENST00000371951/Downstream/1064357;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/32274, chrX-CpG: 18/Downstream/1516636
Upstream sequence
tgtgtcctatggtggaaaaggaaatatctagacataaaaactagacagaagaattctgagaaacttctttgtgatgtgtgcattcaattcacagagttga
Downstream sequence
cggcctcccaagtagctgggactacgggcgcccaccaccatgcccggctaatttttttttttgtatttttagtagagacggggtttcaccgtgttagcca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate