Basic Information
VIS ID
TVIS42000906
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
149191
Orient
+
Integrated sequence
AAAGGTGGGGAGGGAGGAGCTCTCCACAACAATGTTCCCTGGCAGCGTGAGCGCGCAGCCCTGCCGTTGGATGTATCTTCTCATGATGGTGCTGATAGAG| |GGGTCTCCGGCGTAGATGAAAAAGGCCTGGGCCATGCTCTGGCCGGTCACGATCGTTATGGGGTTGTTGGAAATGTTCCGGACCGTCAGCTTGAGGGTCT
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
GRCh37/hg19
Start
126198966/127064983 (Hg38)
End
126198966/127064983 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/5693930; hsa-mir-105-1/Downstream/7104395;
Nearest TSS
ENST00000429181/Upstream/245219; ENST00000486673/Downstream/597547;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/483645, chrX-CpG: 50/Downstream/2457891
Upstream sequence
ATACTTGAAAGCTTCTTATAGCCATCCCTAAGGTACAAATCACCATGTTTTCTGCAGGGAGGCAAGTTAGTGCCTGGCTTTcacacaagaagtacagtcc
Downstream sequence
tatttttgctagagatggggttttgccgtgtttgccaggctggtctcaaactcctgacctcaggcaacctacccaccttggcctcccaaagtgctgagat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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