Basic Information
VIS ID
TVIS42000908
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
102681
Orient
+
Integrated sequence
GAGTATGTGGCCTACTACTGTGGCCGCCGCATCAGGCTGCATGTGCTCTTCCCCCCGGCCATCTTTGCCGGAACGGTGACCTTCGACAGCCCGGTGCAGC| |GCCTCTACCAGAACATTTTCATGTGCTACCGCACGCTGGAGCATGCCAAGATCTGCCAGCTCCTGAACACGGCCCCTCTCAAGGCCATCGTGGGCCACGG
Host Sequence
Chromosome
chrX
Cytoband
q27.2
Reference genome
GRCh37/hg19
Start
141020406/141932620 (Hg38)
End
141020406/141932620 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRAXD ; FRAXA
Nearest miRNA
hsa-let-7f-2/Upstream/1006389; hsa-mir-105-1/Downstream/4060130;
Nearest TSS
ENST00000429181/Upstream/27818; ENST00000446864/Downstream/272670;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/755400, chrX-CpG: 130/Downstream/1700974
Upstream sequence
ttgagacggagtcttgctctgtcgcccaggctggagtccagtggtgcgatctcggctcactgcaagctccacctcccgggttcatgccattctcctgcct
Downstream sequence
TCATTAATTCAATAGCTTTAAGAAGTCTATGTTGCTTGGAAGATTGAAAGAATTTTTCTGAAAGAAATATCATGTTGCTTCCTAAACTTTCACAAGCCAC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate