Basic Information
VIS ID
TVIS42000909
Fusion event
EBV-chrY integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
59229
Orient
+
Integrated sequence
GCCGAGCCTCCACTCCCGCCCCCGGGGGCATTCACATCCATGGTCCTGATTCCGCGCACGGGGCCGGTTCCCCGGGTGCGCTGGCTTTGCCCCCAGTCGC| |CGTTACTCATCTTCGGCGGTGGGGCGGGGAGGACGCCTTGTCGCCCCCCTTCTGGTCCGGGGTCTTACGCGGCTGGCGGCGGCAGCCGCCGAGAGATAAG
Host Sequence
Chromosome
chrY
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
2669609/2801568 (Hg38)
End
2669609/2801568 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-2/Upstream/192314; hsa-mir-12120/Downstream/1804552;
Nearest TSS
ENST00000383070/Upstream/13869; ENST00000430575/Downstream/39918;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/11510, chrY-CpG: 129/Downstream/133355
Nearby gene
LOC108178989(-8964) ;
Upstream sequence
agggtatcagtgattgaagatcaaatgaatgaaatCGgggtcagggtcaagggtcagggtcagggtcagggtcaagggtcagggtcaggggtcagggtca
Downstream sequence
gggaaaagaaaatatttttatctttgttaataaaagtgtactttaccaaattgtaaaaagttatggataggttaagatagaaaatttctttaagtctgag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate