VISDB Viral Integration Site DataBase

VIS ID

TVIS42000910

Fusion event

EBV-PCDH11Y integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

43311

Orient

-

Integrated sequence

TTGCTTATTTTCATGTTCAATAAACGCTATGTTAATGATGAAGAACCTGTGTTCTTTGGAAGTGGGCCCAATGGGGTAGTAGGTTTTGGGAGGGTGCCGT| |GCTAGATATTTCAACTGCCACAGACCCCATTTTGTCCCACCTGTTACCACATTCTAGGTCCTGCATCCAGTGGGCCAGGTGTCTCACCATGGCTCTTTCT

Chromosome

chrY

Cytoband

p11.2

Reference genome

Start

End

5261709/5393668 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-574-5p ; hsa-mir-297 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-376a-2-5p ; hsa-mir-3935 ; hsa-mir-511-3p ; hsa-mir-5694 ; hsa-mir-383-5p ; hsa-mir-432-3p ; hsa-mir-4775 ; hsa-mir-324-5p ; hsa-mir-1306-5p ; hsa-mir-590-3p

Nearest miRNA

hsa-mir-3690-2/Upstream/787440; hsa-mir-12120/Downstream/8085509;

Nearest TSS

Nearest CpG islands

None/Target, chrY-CpG: 62/Upstream/390484, chrY-CpG: 41/Downstream/852355

Upstream sequence

tagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagg

Downstream sequence

aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccaaaacaaacaaacaaaacatgaaaaaCCCCCAACTATATAAATGCCAAAATCTTGGCAGA