Basic Information
VIS ID
TVIS42000911
Fusion event
EBV-chrY integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
6441
Orient
+
Integrated sequence
TATCCCCGCTACGTGCAGTGCTGGGTGATAGAGACCCTAGAATGTGTCGAAATGACCAAGCGTCCCCGCAGCGGGGCTCCCAACACGGGTTCCCAGAGAG| |GGTAAAAGAGGGGGCCATAAAGCCCAGGGTGTAAAACACCGACCGCGCCACCAGATGGCACACGTGGGGGAAATGAGGGTTAGCATAGGCAACCCCCGCC
Host Sequence
Chromosome
chrY
Cytoband
q11.221
Reference genome
GRCh37/hg19
Start
19112052/17000172 (Hg38)
End
19112052/17000172 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12120/Upstream/3520906;
Nearest TSS
ENST00000430575/Upstream/2196139; ENST00000421205/Downstream/500786;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/1543435, chrY-CpG: 21/Downstream/518165
Upstream sequence
tagttagaactaattctgaaagtcagtaacgtttccgtttatgaaatcaacatataaaattccatagcatttccatgcactaatagcaaagtatgtatta
Downstream sequence
tccaacattggtggttgggcctggtggtagaagattggatcataaggacggatttctcattaggattagcaccatcttcttggtgctgtcctcatgatag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate