Basic Information
VIS ID
TVIS42000945
Fusion event
EBV-chr3:q13.11 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
11437
Orient
-
Integrated sequence
ATCAGATGGCATAGAGACAAGGACACCGAAGACCCCCAGAGCCCTCATCGCAGGGTTCTTACCATGCGGCCATGTAGGCCCACTTAACACTACAAGACCT| |ACGCCTCTCCATTCATCATGTAACCCACAAATCATCTAAACCGTAAGTCTAAGGGCCTCCTGAGGTTTTCTCAGGAGGCCCTAATGTATAATTAATCATG
Host Sequence
Chromosome
chr3
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
105028488/105309644 (Hg38)
End
105028488/105309644 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1785528; hsa-mir-12124/Downstream/4293184;
Nearest TSS
ENST00000440867/Upstream/2635731; ENST00000470756/Downstream/57265;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/3459442, chr3-CpG: 32/Downstream/44041
Upstream sequence
aatggagaaatggagaaaaggagaaagagggagaaagggagaaagagggaaggacacgagtaaagtcagacaaggaagaaaaaagaagaaatattgaagg
Downstream sequence
cctctatgcaaataaactagaaaatctagaagaaatggataaattcatagacacatacaccatcccaaaactaaaccaggaaaaagcagaatccctgaat
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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