Basic Information
VIS ID
TVIS42000946
Fusion event
EBV-chr5:q21.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
7069
Orient
-
Integrated sequence
CCTAGTGGTTTCGGACACACCGCCAACGCTCAGTGCGGTGCTACCGACCCGAGGTCAAGTCCCGGGGGAGGAGAAGAGAGGCTTCCCGCCTAGAGCATTT| |GCAAGTCAGGATTCTCTAATCCCTCTGGGAGAAGGGTATTCGGCTTGTCCGCTATTTTTTTGTGGCTAGTTTTGCACCCACAACATGTAAGGGCCCGCTA
Host Sequence
Chromosome
chr5
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
100463550/101127846 (Hg38)
End
100463550/101127846 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/311281; hsa-mir-103a-1/Downstream/9385983;
Nearest TSS
ENST00000502646/Upstream/224580; ENST00000506058/Downstream/1016231;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/224412, chr5-CpG: 26/Downstream/1168600
Upstream sequence
aaaatttaagtgacaatacagtattgttaactataggcactatgctgtatagtggatctctaggacttattcttgcataaatgaaactgcacttttgact
Downstream sequence
tttctcactttttaatgcggttgatttttttctgtaaatttgtttaagttccttttagattgtggatattacacctctgtcagatgcatagttatcttat
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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