Basic Information
VIS ID
TVIS42000947
Fusion event
EBV-MTCO2P12 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
169253
Orient
+
Integrated sequence
CCGGAGGCAGTACGGGTACAGATTTCCCGAAAGCGGCGGTGTGTGTGTGCATGTAAGCGTAGAAAGGGGAAGTAGAAAGCGTGTGTTTGTGTTAGAAAAG| |CGGGTCCCCGGGGGGCAAGCTGTGGGAATGCGGTGGCCAAGTGCAACAGGAAATGGAAAGGCAGTGCGGCAATCAGAAGGGGGAGTGCGTAGTGTTGTGG
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
GRCh37/hg19
Start
568265/632885 (Hg38)
End
568265/632885 (Hg38)
Orient
+
Location type
upstream
Fragile sites / regions
FRA1A
Target gene
MTCO2P12
Nearest miRNA
hsa-mir-12136/Upstream/200; hsa-mir-101-1/Downstream/534219;
Nearest TSS
ENST00000473358/Upstream/45217; ENST00000422528/Downstream/53788;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/21616, chr1-CpG: 60/Downstream/145719
Upstream sequence
GAGCCACAGGGCTCCATAAAACGGAATCAGTGTCTCAATATACATGACCTATGTTCATAGCAATGTTCAGCCATTTGGGTTTGAAGAAAACCACATTAAA
Downstream sequence
GCCAAGACCCGTTTGGAGCGAACTGCCTTGTTCTTTGCTGTGTGGAAGGTTCTGTCCCTACTGCTGAACTCCAGTTCCTCCCCAAGCACCCTGGCCTCAG
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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