Basic Information
VIS ID
TVIS42000949
Fusion event
EBV-chr10:q22.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
152460
Orient
+
Integrated sequence
GTAGACGAGAACTCCTGAATCATTTTTCCCAGCACCCAGAGCAGCAGTTCTATGAGAAGAGCTATCAGCCAGACATCCATTCGGTGAACCAATTTTCTTA| |CAAAGATGATAAACAAGATGCCAGCCAGTGTTAGCAGAATCAGCAGGACGAGCAGCAGGCTTGTCATGCCGCTGAGGAAGGCGCTGTAGGATTTAGTGCA
Host Sequence
Chromosome
chr10
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
73072095/71312338 (Hg38)
End
73072095/71312338 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/3908928; hsa-mir-107/Downstream/478409;
Nearest TSS
ENST00000439456/Upstream/94110; ENST00000469204/Downstream/6920;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/94321, chr10-CpG: 37/Downstream/64876
Nearby gene
UNC5B(-9459) ; SLC29A3(+6915) ;
Nearest cancer related gene
UNC5B(TSG, -9459) ;
Upstream sequence
CTAGGTAGGGAAAAGGTCTGTGGAGAAGTAGTAGAACCAGAGAATGGaaacaaacaaacaaacaaacaaTGCAGATAGAGTCTGATTCTAGCCAGGGCTT
Downstream sequence
CTAGGCAGCTCAAAGCCTAGTGTCAGAGGATGTAATAAACTCAGCACCATTTGGGGCAATCACTGGGACCAGGCACTCCACTCCAGCAGGCAGGGCAAGG
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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