Basic Information
VIS ID
TVIS42000950
Fusion event
EBV-chr10:q26.12 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
120999
Orient
-
Integrated sequence
CATTCTGCGTCCCGTGAGTGGAAGCCAGGGGTAAGATGCAGCCAATCCTCTGTTGCATCTTGGCAATCTCATCGGTATACAGACGAGAGGAGAGAGACAC| |TACCACTTTCAAATCCATCTTTATTGACAATTATCAAAAAACCACCTTATTTCCAAACTTTAATATTCTTCGTACCGGCGCCACCTCTTCAATTATATAG
Host Sequence
Chromosome
chr10
Cytoband
q26.12
Reference genome
GRCh37/hg19
Start
123026934/121267420 (Hg38)
End
123026934/121267420 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/1308828; hsa-mir-202/Downstream/1149545;
Nearest TSS
ENST00000439456/Upstream/88720; ENST00000447943/Downstream/213065;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/287542, chr10-CpG: 185/Downstream/329682
Upstream sequence
TGGTGATGCAACACCTTTCTCTCTTTCTCACCGCAGGGAACAGCATTGCTCCGCTCCATCTATCCTGTTTCACGCCTTTCCAGCTTAGTTTTAAATTCCT
Downstream sequence
TACTGATTAATTCTGTAATTAAATGATTAAGATTATTTTAGGGATATAGAGAATAAAATGTCAATAGAAAGAGATCCTACTGAGCTCTGTGTTTAAGGAC
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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