Basic Information
VIS ID
TVIS42000951
Fusion event
EBV-chr10:q26.12 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
78593
Orient
+
Integrated sequence
GGTTGGTAGGCACGTGAGTAGAGCTGGGTAGACCTGTCGTTGTATTGGGATCAGCAAATCCAGTTGTATTCAAGGTAGGGGAGGTGGTGGTGCTCTCGGG| |TGCCTTGGAGAATATAACCTTGTGGGTTGTTGTGGTGGCATTGGTAGCCGTTCGTGTGATAATGAGTGTCTTGGGGGCCGTGCCAAGACCCGAGACAGTA
Host Sequence
Chromosome
chr10
Cytoband
q26.12
Reference genome
GRCh37/hg19
Start
123027003/121267489 (Hg38)
End
123027003/121267489 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/1308897; hsa-mir-202/Downstream/1149476;
Nearest TSS
ENST00000439456/Upstream/88789; ENST00000447943/Downstream/212996;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/287611, chr10-CpG: 185/Downstream/329613
Upstream sequence
CAGTGCATGCACATTTTAGGTAAATGAAGAAAAGGCTTTTAATGAGGTCATACAGATTGTGATGTCCCTACTTAGACATGCAAATCAACATAAGGAGTTT
Downstream sequence
CACTCACAGGCACAAGTTTCCCATCAGGGGAGCCAAGAGTATTTTGGAAACAATGCATGACACAGAAGAAGAGGAGCCAAAGCTGTCTTATATATAGGGA
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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