Basic Information
VIS ID
TVIS42000953
Fusion event
EBV-chr16:p13.2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
66842
Orient
-
Integrated sequence
GAGGGACTTGGAGTTTTACAAGTTCCTCTTTACGTTCCTGGCCATGGCCGAGAAGCTTGTGAACTTTAACATTGATGAACTGGTCACCAGCTTCGAGAGC| |CACGACATTGATCACTACTACACCGAGCAGAAGGCCATGGAGAACGTCCACGGGGAGACTTATGCTAACATTTTAAACATGCTCTTTGATGGGGACAGGG
Host Sequence
Chromosome
chr16
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
9275058/9181201 (Hg38)
End
9275058/9181201 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/3548635; hsa-mir-11401/Downstream/2125239;
Nearest TSS
ENST00000527434/Upstream/74027; ENST00000564305/Downstream/174387;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/88369, chr16-CpG: 282/Downstream/998885
Upstream sequence
gtttacctacctgtaaaGAGCCCTTGTAAGGATGAAAGTAGGTGGCACAGACCAAGCATCTGTACCTGGCAGACCAGTCCTTAATAAACAGGAATTATTG
Downstream sequence
tggtggggagtgtgagaggtcagagagggcttcctggaggaggtgacatctaagatgtaccttgaaaaagtgagtagatggtgggtgtggtggcttttgc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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