Basic Information
VIS ID
TVIS42000956
Fusion event
EBV-chr18:q11.1 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
139485
Orient
+
Integrated sequence
ATAGCACCGCTATCCACTATGTCTCGCCCGGGCTATATGTCGCCTTACCTCCCCTATATAGTCACGACCCCACCGAACCAGGCATGATGTAGAATAAAAT| |TTTATGCATCATCTTCTAATCTGTGCCGCTTGGAGGGAAACATGACCACCTGAAGTCTGTTAACCAGGTCAGTGGTTTTGTTTCCTTGATAGAGACACAA
Host Sequence
Chromosome
chr18
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
18516607/20936646 (Hg38)
End
18516607/20936646 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3156-2/Upstream/6106404; hsa-mir-1-2/Downstream/746872;
Nearest TSS
ENST00000575820/Upstream/5772179; ENST00000579454/Downstream/18224;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/5605471, chr18-CpG: 113/Downstream/174333
Upstream sequence
TGTGGCCGTGCCTGGCCTGTGTGTGTTGAACGCGTTCCTGCCGTGCGGGAGCCACCTACCCAGCGGAGCCTCAGAGTCTGAGTTCTCAATGTGAGCCTCA
Downstream sequence
gacagagcagttttgaaacactctttttgtaggatctgcaagtggatatttggatagcttagaggatttcctgggaaatgggaatatattcatatgaaat
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate