Basic Information
VIS ID
TVIS42000957
Fusion event
EBV-chr2:q12.2 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
5955
Orient
-
Integrated sequence
CAAATGTGGTTTGTATGGCTACTTTGTGTTCCTAAAAAATGCAACAATAGAAGTGGAAACCCTCAGTCACGGGACATTAACCTCAACCACAAAATGGGGG| |TTGGAGAAAGTAACCACATATACTGGAGATGATTCATGGGCTGGGGGTTCCCGGACAATACACCCATCTGGAGTTCAACCTAATTACATGGTAGATAAAT
Host Sequence
Chromosome
chr2
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
106826975/106210519 (Hg38)
End
106826975/106210519 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/3778153; hsa-mir-10b/Downstream/2930971;
Nearest TSS
ENST00000437798/Upstream/16180; ENST00000643224/Downstream/257807;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/15800, chr2-CpG: 43/Downstream/59143
Upstream sequence
aaggcaaatgatagaaaaagacataatcttaaaaagttagtcacaagaatggcaggtggctattttaacattagacaaagtagatttcaggaaaagaata
Downstream sequence
aatgggggcaacaagtgaacatccttccactgtgtttccaaaatccatctacaaagacagcaaggaaaaagaaaaagaaagagaaagaagtagtaaagaa
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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