Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS42000960
Fusion event
EBV-SPSB4 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
1002
Orient
-
Integrated sequence
ACACTTAACTTGACTACAATGTTCCTTCTCATGCTCCTATGGACACTTGGTAAGTTTTCCCTTCCTTTAACTCATTACTTGTTCTTTTGTAATCGCAGCT| |CTAACTTGGCATCTCTTTTACAGTGGTTCTCCTGATTTGCTCTTCGTGCTCTTCATGTCCACTGAGCAAGATCCTTCTGGCACGACTGTTCCTATATGCT
Host Sequence
Chromosome
chr3
Cytoband
q23
Reference genome
End
140852918/141134076 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/6696170; hsa-mir-1224/Downstream/10431800;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/38784, chr3-CpG: 154/Downstream/96993
Upstream sequence
tggtagtagtagtagtggtggtggtagtagtagtggtagtagtagtagtggtggtggtggtggtggtagtagtaatagtagtggtggtggtggtagtagt
Downstream sequence
cagctgttgtaaaagggattgagttcttgatttgattctggtcactgttggtgtatagcagtgctactgatttgtgtacattgattttgtatactgaaac
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.