Basic Information
VIS ID
TVIS42000961
Fusion event
EBV-LOC105374354 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
126761
Orient
-
Integrated sequence
CTGCGGTGCTTCCTGCCTGTGGAGGCTATTTATCCCGCGGCCGTGTCAAACTGGAACTCGACTCTAGATCTCCATGGGCTGGAAAATCAGAGCCTAGTCA| |GAGAGAACCGAAGCGGGGTCTTTTGGACTACCAACTTTCCCTCGGTGGTGTCCTGCCGGGACGGTCTCAACGTGTCCTGGTTTAAGGCCGCAACTGCCAC
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
3452644/3450917 (Hg38)
End
3452644/3450917 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374354
Nearest miRNA
hsa-mir-4800/Upstream/1200761; hsa-mir-12113/Downstream/2472358;
Nearest TSS
ENST00000502981/Upstream/5017; ENST00000511267/Downstream/12394;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2649, chr4-CpG: 69/Downstream/12155
Upstream sequence
atgctgtctcacaaaaaTaagaagaaggaagaagaaggaagagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
Downstream sequence
ctctctctttctttcttttcttcattttttttctttctttctgagacagggtctcactctgccacccagcctggagtgcagtggcgcgatcttggcttac
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
Curate