Basic Information
VIS ID
TVIS42000962
Fusion event
EBV-chr4:p15.33 integration
Validated
No
Detection method
GenCap Enrichment+NGS
Data source
Curated
Sample type
Tumor
Disease
Gastric carcinoma (GC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25355872
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
88305
Orient
+
Integrated sequence
CCATCAGTCTGCGCCCTCTCGGTGATGGATGCTGGTAAGGCCCAGCCCATAGAAAGTTCACACTTGAGTTCCATGTCGCCCACACAGCCGATATCGCACG| |AAGAACAACCCCGGTATGAGGATCCTGACGCTCCTCTGGATTTAAGTTTACATCCAGACGTTGCTGCTCAACCAGCTCCCCAGGCTCCATACCAGGGATA
Host Sequence
Chromosome
chr4
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
13273330/13271706 (Hg38)
End
13273330/13271706 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/1488458; hsa-mir-12115/Downstream/356159;
Nearest TSS
ENST00000502981/Upstream/323036; ENST00000510907/Downstream/109888;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1842074, chr4-CpG: 97/Downstream/212192
Nearby gene
LOC105374494(-1702) ;
Upstream sequence
AGAGTATTTTTTTCTATTTTGCAACCATAGTGTGAACGTTCAGCATTGCATACTGAAAAACTTTGAATCTCATGTAAGAAGGAACTGGGCTAGAGACAGG
Downstream sequence
tcagtattgtgaaaatggccatactgcccaaagtaatttatagattcaatgccatccccatcaagctaccattgactttcttcacagaattagaaaaagc
Reference
Cao, S., et al.High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project. J Virol,2015, 89(1): 713-729.
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